FastQCFastQC Report
Sun 12 May 2024
EGAF00005776814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81321140
Total Bases6.1 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4830790.5940386472693324No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1252160.15397718231692276No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT1005910.12369600327786845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)