FastQCFastQC Report
Thu 16 May 2024
EGAF00005776826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94128754
Total Bases7.1 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2346660.24930320441721773No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2091350.2221797177937785No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT1535390.16311593798426355No Hit
CTTTGTGTTTGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGT1277380.13570561021130695No Hit
TGTTTGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGA1191420.1265734379103754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)