FastQCFastQC Report
Fri 17 May 2024
EGAF00005776850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences148360739
Total Bases12.6 Gbp
Sequences flagged as poor quality0
Sequence length35-100
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4316620.29095433394949594No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT3036590.20467611717679568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)