FastQCFastQC Report
Thu 16 May 2024
EGAF00005776875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106868461
Total Bases8 Gbp
Sequences flagged as poor quality0
Sequence length36-76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAA1209590.1131849367607156No Hit
CAAAGAGCTGTTCCTCTTTGGACTAACAGTTAAATTTACAAGGGGATTTA1182830.11068092390700753No Hit
CCAAAGAGCTGTTCCTCTTTGGACTAACAGTTAAATTTACAAGGGGATTT1153870.10797105050478831No Hit
GACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTA1143270.10697917695287106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)