FastQCFastQC Report
Thu 16 May 2024
EGAF00005776916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113643559
Total Bases8.5 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5185910.4563311854744007No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT2079020.18294217624775375No Hit
ACTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTAT1387070.12205443161103394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)