FastQCFastQC Report
Mon 8 Aug 2022
EGAF00005776916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113643559
Sequences flagged as poor quality0
Sequence length35-76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5158940.4539579757441422No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT2069770.18212822778631915No Hit
ACTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTAT1376630.12113576977996615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)