FastQCFastQC Report
Fri 17 May 2024
EGAF00005776917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165811083
Total Bases12.5 Gbp
Sequences flagged as poor quality0
Sequence length60-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT2207390.13312680672859487No Hit
ACTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTAT1917320.11563280121630953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)