FastQCFastQC Report
Thu 16 May 2024
EGAF00005776958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119359364
Total Bases9 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1840100.1541646954486118No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT1648860.13814249211314497No Hit
ACTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTAT1613420.13517330739128267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)