FastQCFastQC Report
Thu 16 May 2024
EGAF00005776983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005776983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92115798
Total Bases6.9 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1846510.2004553008377564No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1115620.1211106047195075No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT1108260.12031161039282316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)