FastQCFastQC Report
Thu 16 May 2024
EGAF00005777108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005777108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115700390
Total Bases8.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2070630.1789648245783787No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1559000.13474457605544804No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1413830.12219751376810399No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)