EGAF00005777542 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005777542
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	46146523
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	3079109	6.672461541685383	No Hit
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	240690	0.5215777578735455	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG	204750	0.4436954004096907	No Hit
ACTGCTCGAGTCATACCCATACGATGTTCCAGATTACGCTATATGTGAAC	193609	0.41955273640009677	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTAT	85381	0.18502152372346667	TruSeq Adapter, Index 13 (97% over 38bp)
AAGCAGTGGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGAT	83770	0.18153046980375964	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	64963	0.14077550328114644	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGCAGT	739645	63.600822	1
TCAACGC	751335	62.59454	12
CAACGCA	751405	62.56779	13
ATCAACG	751950	62.5374	11
AACGCAG	757015	62.088776	14
ACGCAGA	757435	62.038113	15
AGAGTAC	758550	61.865353	19
CGCAGAG	759780	61.82728	16
GAGTACA	394700	61.758236	20
GTACATG	394140	61.58403	22
CAGAGTA	764140	61.448967	18
TACATGG	394505	61.43301	23
CATGGGG	206530	61.424587	25
GCAGAGT	765530	61.34954	17
AGTACAT	397295	61.294945	21
GTGGTAT	767285	61.275578	6
GGTATCA	768285	61.19537	8
TGGTATC	768990	61.131924	7
AGTGGTA	769145	61.12087	5
ACATGGG	395370	61.090576	24