EGAF00005784930 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005784930
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11839697
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTAGCCCTGTCATTCTAGGAGTTTATTATCCTTCAGACACAGCTACTTA	33512	0.2830477840775824	No Hit
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG	29807	0.2517547535211416	No Hit
GAATGTAAATGCAATTTTATTTACCACTTTGATGCTCCAAATGGCACTGC	20530	0.1733997077796839	No Hit
GCAGTGCTTAGACTCAGTACCACCTGCCCAGAGCAAATCTGATGGACTGACTTCCGATCAATAGGTTTGATGGC	18543	0.15661718369988692	No Hit
TTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTG	17474	0.1475882364219287	No Hit
CACCTTGGAGCCACTATCAAATGCTGTGAAGAGAAATGTACCCAGATGTA	16398	0.13850016600931594	No Hit
GGAGTCTTCCTGGGTCAGTTGCCTTCCCACAGGCCTCACACACAGTGCAC	15091	0.12746103215310325	No Hit
GCTCTTTTACTTTTGTGACAATTTGTGCTACAAGTGAAGATCCACAGCAG	14518	0.12262138127352414	No Hit
GGACAAAGCAGGAAGATGTGACTGAAATCCTGAAAGGAGCCGGCTCCTGC	13767	0.11627831354130093	No Hit
CTTTCGTGTTCAAACCACGGAGTTCACAACACAGCAGCACACACAGCCGG	13712	0.11581377462615808	No Hit
GCCACTTGATTTCTTTTCCTTTCTCTCTCTACCAATATTAAGCCTTAGTG	12868	0.10868521381923878	No Hit
AACCTGCACGTTTTAATGGAGTAACCGCTATATCCAGGCACATTCCATGA	12272	0.10365130121150903	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTATA	310	80.840126	70
CGCGTAT	475	74.95641	69
GGGTACG	455	72.655945	70
TCGCACG	300	67.099365	14
GTACGCG	140	66.934944	19
TCGCGTA	300	66.181496	59
CGCGTAC	310	66.116714	49
CCGATCG	330	65.33433	54
GCGTACG	310	65.00626	50
TCGTACG	285	64.5434	29
CGGCTAG	530	64.177666	25
CGTAAGT	365	63.70822	16
CGGTACG	165	63.149	48
CGCGAAT	305	62.980133	64
TCGCTCG	315	62.940342	55
CGTACGG	295	62.355225	30
CGCGATC	335	62.160233	12
CGAATCG	140	61.979156	26
AGTACGC	300	61.701447	64
TGCGAAC	335	61.12526	16