EGAF00005784954 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005784954
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15014326
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG	32557	0.2168395704209433	No Hit
GAATGTAAATGCAATTTTATTTACCACTTTGATGCTCCAAATGGCACTGC	28689	0.19107750824112918	No Hit
GCTAGCCCTGTCATTCTAGGAGTTTATTATCCTTCAGACACAGCTACTTA	22293	0.14847819342673124	No Hit
AACCTGCACGTTTTAATGGAGTAACCGCTATATCCAGGCACATTCCATGA	21911	0.14593395667577752	No Hit
TTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTG	21666	0.14430218179623916	No Hit
CACCTTGGAGCCACTATCAAATGCTGTGAAGAGAAATGTACCCAGATGTA	19525	0.1300424674407629	No Hit
GGACAAAGCAGGAAGATGTGACTGAAATCCTGAAAGGAGCCGGCTCCTGC	18781	0.12508720005147084	No Hit
GGAGTCTTCCTGGGTCAGTTGCCTTCCCACAGGCCTCACACACAGTGCAC	17282	0.11510340191094824	No Hit
CTGATTGATGTTTAGCTCTAGACTAAGTTGCTTTCAAGTGATAACTGTCT	16245	0.1081966649718409	No Hit
AAGATGTTTCATACCAAGGAGGCAAATCTATAAAGTTATCATCTGAGACA	16241	0.10817002374931782	No Hit
TAAAATATGTTCTGTTTTCTTAACTTCAGGATATGTGTGTAGTTTGTGGC	15413	0.10265529068704117	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTATA	320	88.03065	70
GGGTACG	660	69.767876	70
CGCGTAT	570	69.35438	69
CGATCTA	520	65.63232	70
CGCGAAT	335	65.21069	64
GTCGATT	490	63.594814	14
GCGAAAT	545	63.529987	11
CGTAGCG	400	63.46649	53
GCGCGAA	345	63.225372	63
CGCAATT	430	62.817543	40
TTCGTCG	495	62.252975	11
CGTAAGT	320	61.67372	16
CGATAAG	545	61.62922	32
GTCGCGT	310	61.431854	24
CTCGCGT	490	61.329514	58
TAGAACG	715	61.244957	60
AGTACGC	670	61.003548	64
ACGTACG	280	60.59173	12
CGAATCG	270	60.27355	26
TACGCGA	385	60.25629	20