EGAF00005785004 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005785004
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3026005
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG	7555	0.24966911819379015	No Hit
GCAGTGCTTAGACTCAGTACCACCTGCCCAGAGCAAATCTGATGGACTGACTTCCGATCAATAGGTTTGATGGC	4659	0.15396537679217318	No Hit
GCTAGCCCTGTCATTCTAGGAGTTTATTATCCTTCAGACACAGCTACTTA	4588	0.1516190488779761	No Hit
CACCTTGGAGCCACTATCAAATGCTGTGAAGAGAAATGTACCCAGATGTA	4457	0.14728990864192226	No Hit
TTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTG	3657	0.1208524110171662	No Hit
GAATGTAAATGCAATTTTATTTACCACTTTGATGCTCCAAATGGCACTGC	3569	0.11794428627844303	No Hit
GGAGTCTTCCTGGGTCAGTTGCCTTCCCACAGGCCTCACACACAGTGCAC	3088	0.10204874083155845	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCGAC	45	1.8189894E-12	77.850105	69
TTACCGC	45	3.6379788E-12	72.09337	68
GCGTATA	30	7.017994E-5	71.74815	70
ACTCGCG	50	0.0	69.816795	66
TCGCGTA	30	1.06922016E-7	69.57294	59
ATACGGC	50	0.0	69.46945	37
CGAATCG	70	0.0	69.45797	26
CGTACGG	60	0.0	69.455666	30
TCGTACG	60	0.0	69.455666	29
ACGTACG	90	0.0	69.45338	12
CGCGTAT	70	0.0	66.72865	69
GCGCTAA	105	0.0	66.14716	5
CGCGATC	165	0.0	65.24408	12
TTCGCGT	80	0.0	65.22463	59
TGCGAAC	225	0.0	64.82636	16
CGCGAAA	150	0.0	64.82422	14
CGTACCG	70	0.0	64.49668	23
ATCGCGA	65	0.0	64.44627	66
CCGATCG	65	0.0	64.16701	54
TAACGGG	60	0.0	63.811108	61