FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35066619
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTATCG169150.022.630749145
TATGCCG227550.018.288244145
TCGTATG277150.017.971272145
CTCGTAT318100.017.275972145
CGTATGC288500.016.61088145
TATCTCG461450.016.46545145
TCTCGTA385000.016.10061145
TCGCGTA83200.015.685058145
CGCGTAT70250.015.583592145
ATCGCGT94150.015.477924145
ATCTCGT456650.014.749226145
TATCGCG98800.014.529318145
CGCTCAT1251100.013.925113145
TTATCGC129200.013.635803145
GTATGCC342750.013.558683145
ACCGCTC1543900.013.533552145
ATGCCGT250550.013.021321145
CATTATC972700.012.782688145
CCGCTCA1475700.012.680223145
CTCATTA1178800.012.515876145
Produced by FastQC (version 0.11.5)