FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29658432
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCATCG183350.024.437107145
CGCGTAT71000.018.07412145
TCGTATG168800.017.266163145
CGTATGC197800.017.153858145
CTCGTAT200000.017.146416145
TATGCCG153550.016.95067145
TCGCGTA86150.015.568927145
TCGCGCA694600.015.562706145
GCGCATC595550.015.424128145
CGCGCAT598550.015.407385145
ATCGCGT96200.015.223641145
ATCTCGT300600.015.17064145
TCTCGCG870100.014.915097145
TCTCGTA248200.014.868195145
CTCGCGC809350.014.574492145
ATGCCGT185950.014.153135145
CTCTCGC1057050.013.594096145
ACTCTCG1092300.013.520456145
GCGTATG88500.012.943629145
GTATGCC246950.012.35991145
Produced by FastQC (version 0.11.5)