FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27828071
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGATCG162750.024.011332145
TATGCCG148150.019.428413145
CGTATGC190350.018.777704145
CGCGTAT53850.018.445198145
CTCGTAT206550.018.112272145
TCGTATG178800.018.00379145
TCGCGTA63300.016.149677145
TCTCGTA250550.015.7996235145
ATCTCGT303800.015.297439145
ATCGCGT72900.015.017509145
CGGCTAT859300.014.748406145
ACCGGCT1123500.013.654981145
TATGATC654050.013.568096145
GATCTCG422300.013.202426145
CCGGCTA1025450.013.157711145
TCACCGG1372550.012.909859145
GGCTATG909350.012.820456145
GCGTATG69100.012.695675145
GCTATGA846700.012.544592145
GTATGCC234400.012.34138145
Produced by FastQC (version 0.11.5)