FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27828071
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG145350.014.963639145
TACGTCC1056800.014.180079145
GTACGTC1156900.013.34169145
CGTCCTG968700.013.3142805145
ACGTCCT999450.013.173035145
GGTGTAG536950.012.921386145
TGTACGT1288700.012.804171145
GTGTACG1422850.012.616025145
TGGTGTA642350.012.200707145
GTGTAGT223300.012.110195145
GAGTGTA1787450.011.733986145
AGTGTAC1608850.011.689218145
TGTACGG54200.010.700935145
AGAGTGT2079450.010.417492145
CTGGTGT855650.010.345478145
AAGAGTG2263850.09.841152145
AAAGAGT2431150.09.596333145
GTCCTGG1231850.09.546057145
ATCGGAC67150.09.285033145
TCCTGGT1064650.09.152156145
Produced by FastQC (version 0.11.5)