FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26304191
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC381500.011.414629118-119
CGTCTGA281150.010.889749118-119
CACGTCT373750.010.760571118-119
ACGTCTG326400.010.445566118-119
CACACGT451600.010.2417555118-119
GCACACG509000.010.178842118-119
ATCGGAA1088850.09.950576118-119
TCGGAAG1030550.09.82125118-119
GATCGGA1178450.09.552189118-119
AGATCGG1297700.09.384483118-119
CGGAAGA972100.09.350724118-119
TAGATCG410200.09.087002118-119
AGCACAC679950.08.690768118-119
AGAGCAC787900.08.473393118-119
GAGCACA761600.08.282037118-119
AAGATCG416650.08.218637118-119
CAGATCG367350.07.978396118-119
GAAGAGC1030350.07.8325605118-119
AAGAGCA980600.07.4751496118-119
GTCTGAA419800.07.1231856118-119
Produced by FastQC (version 0.11.5)