FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86504542
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA331100.011.09727594
AGATCGG403400.09.88873194
ATCGGAA332100.09.35193394
TAGATCG163000.08.417129594
TCGGAAG382600.06.90176494
CGGAAGA446650.06.027761594
CAGATCG240650.05.58404694
AAGATCG207650.05.159073494
Produced by FastQC (version 0.11.5)