FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86504542
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA337650.010.84395394
AGATCGG411750.09.72574594
ATCGGAA334250.09.126204594
TAGATCG152650.08.20508192-93
GCGTCGT117900.06.976557394
TCGGAAG399600.06.610400794
AGCGTCG138300.06.3892994
CGTCGTG125900.05.562595494
CGGAAGA466600.05.550393694
AGAGCGT248300.05.527427794
CAGATCG252200.05.330130694
AAGAGCG316350.05.036731294
AAGATCG223250.05.010746594
Produced by FastQC (version 0.11.5)