FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19162222
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGCCT535450.014.054431145
TCTTCGC670100.013.740386145
CTTCGCC631750.013.667887145
TCGCCTG508100.013.455423145
GTCTTCG737050.013.338211145
CGCCTGT537100.012.229477145
GAGTGTC1132400.010.864676145
AGAGTGT1275900.010.830316145
TGTGTAG370750.010.657373145
CTGTGTA447350.010.5828145
AGTGTCT1133450.010.432453145
GTGTCTT1060600.010.362927145
AAGAGTG1396950.010.07867145
GTGTAGA290600.09.829592145
GATCTCG168600.09.589195145
AAAGAGT1507650.09.569459145
TGTCTTC1118900.09.349963145
TAGATCT204750.09.277101145
CCTGTGT603150.09.123286145
GCCTGTG680650.09.096385145
Produced by FastQC (version 0.11.5)