FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27659646
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGCCG72150.016.780758145
TCTTCGC1269300.013.713846145
TTCGCCT1011750.013.141882145
CTTCGCC1183700.012.892639145
GTCTTCG1395950.012.827986145
TCGCCTG962550.012.70642145
TGTGTAG659000.012.420525145
GTGTAGT226850.012.080485145
ATCGGAC69200.011.733926145
CGCCTGT988850.011.708624145
CTGTGTA796950.011.644217145
GAGTGTC2093400.010.957606145
TAGATCT341450.010.95605145
GTGTAGA504750.010.758132145
AGTGTCT2050100.010.531277145
GTGTCTT1917650.010.419365145
GATCTCG291000.010.364103145
AGAGTGT2338800.010.207751145
CCTGTGT1024800.010.173049145
TGTCTTC1969750.010.000229145
Produced by FastQC (version 0.11.5)