FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57799580
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATTCGT89600.020.3164251
ATTCGTG92350.019.799112
TCGAGTG92600.018.0835341
ACGATCG49950.017.24134336-37
GTCGTAT53950.016.50892674-75
CGATCGG53000.016.2052538-39
CGAGTGA105250.015.7646972
CGATACG24750.015.67024270-71
TATTACG60100.014.84622878-79
TACGTAG64300.014.23751980-81
CGTGGAT132400.014.0388275
AGTCGTA66750.013.69695872-73
GGCGTAA67500.013.17588990-91
CGTATTA69300.013.01656476-77
TTCGTGG152850.012.4882083
TCGTGGA156150.012.3801554
CGCCGTA37400.012.37163346-47
CTAACCG70400.012.11888858-59
ACTCGCC141000.012.08344594
GCGTAAT74000.012.08248792-93
Produced by FastQC (version 0.11.5)