FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21539293
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCG128450.027.93926145
TCGTATG185550.019.849363145
CTCGTAT214300.018.404354145
CGTATGC198700.018.06139145
CGCGTAT61200.017.532915145
TATGCCG156150.017.364946145
TATCTCG314050.016.760294145
TCGCGTA72500.016.600222145
TATCGCG89050.016.527454145
ATCGCGT83550.016.487354145
TCTCGTA257850.016.026974145
TCGTATC556200.015.615995145
ATCTCGT306700.015.341745145
ATTCGTA701600.015.169817145
TTCGTAT634700.015.101037145
ATGCCGT170200.014.738742145
GTATCTC443450.013.945953145
GTATGCC226000.013.922753145
GTATCGC116050.013.744261145
AATTCGT785250.013.710785145
Produced by FastQC (version 0.11.5)