EGAF00005787214 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005787214
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	46118002
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	17540	0.0	11.364035	94
GCGTCGT	18930	0.0	11.349111	94
AGCGTCG	21725	0.0	10.927678	94
TCGTGTA	14260	0.0	10.417508	94
GAGCGTC	29455	0.0	9.99106	94
GATCGGA	65930	0.0	9.882718	94
ATCGGAA	60280	0.0	9.779589	94
AGAGCGT	32950	0.0	9.758812	94
TCGGAAG	58360	0.0	9.650233	94
GTCGTGT	16975	0.0	9.63753	94
TAGATCG	23495	0.0	9.284079	94
CGTGTAG	14340	0.0	9.244773	94
AGATCGG	74845	0.0	9.201764	94
AAGAGCG	38920	0.0	9.08325	94
CGGAAGA	56980	0.0	8.671146	94
AAGATCG	23390	0.0	7.175204	94
CAGATCG	27975	0.0	6.9906816	94
GAGATCG	32745	0.0	6.4604654	94
GAAGAGC	78015	0.0	5.694426	94