EGAF00005787215 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005787215
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	64157957
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	73360	0.0	10.017952	94
GATCGGA	78635	0.0	9.752272	94
TAGATCG	30990	0.0	9.400947	94
TCGGAAG	71740	0.0	9.222375	94
AGATCGG	89010	0.0	9.111786	94
CGGAAGA	69785	0.0	8.571716	94
ACACGTC	25145	0.0	8.166412	94
CAGATCG	33930	0.0	7.3815036	94
CACACGT	34745	0.0	7.370648	94
CGTCTGA	19845	0.0	6.843027	94
GCACACG	38735	0.0	6.7084637	94
CACGTCT	29050	0.0	6.615744	94
ACGTCTG	24405	0.0	6.3923535	94
AAGATCG	28135	0.0	6.279751	94
GAGATCG	39865	0.0	6.270777	94
AGAGCAC	74935	0.0	5.3363748	94
GAAGAGC	100755	0.0	5.013527	94