FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35154516
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGATCG109300.029.649904145
TCGTATG194150.018.745724145
TATGCCG152100.017.445675145
CGTATGC193700.017.254692145
CTCGTAT234850.016.608393145
TACTCGA759300.016.279718145
ATCGCGT67400.016.242504145
ATCTCGT352400.016.108747145
TTACTCG840700.015.772792145
TCGCGTA58100.015.348462145
ACTCGAT682300.015.152353145
CGCGTAT44600.015.11764145
CTCGATC669050.014.921458145
TCTCGTA287250.014.790181145
CGATCGC98800.014.749422145
ATTACTC1057200.013.331377145
GATCTCG489550.012.899028145
ACATTAC1320050.012.807787145
CATTACT1252150.012.460108145
CACATTA1497200.012.130084145
Produced by FastQC (version 0.11.5)