FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30285646
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACGTCC1154050.013.802069145
GTACGTC1271150.013.71123145
ACGTCCT1092800.013.673386145
CGTCCTG1042300.013.556822145
GGTGTAG582300.013.334644145
GTGTACG1548600.012.584291145
GCGTCGG131950.012.582439145
TGTACGT1411900.012.421404145
AGTGTAC1764200.011.999794145
TGGTGTA706200.011.63164145
GAGTGTA1951800.011.422169145
AGAGTGT2267150.010.74159145
GTGTAGT248100.010.51997145
CTGGTGT934800.09.82645145
TCCTGGT1165900.09.80639145
GTCCTGG1328500.09.637578145
TGTACGG55800.09.614712145
AAGAGTG2464000.09.598028145
AAAGAGT2668300.09.564158145
CCTGGTG1212950.09.228756145
Produced by FastQC (version 0.11.5)