FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23141488
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCATCG169800.024.081171145
TCGTATG214500.019.029058145
CGTATGC236950.018.51121145
CTCGTAT249250.017.772242145
TATGCCG182600.017.588919145
CGCGTAT70300.017.325674145
TCTCGTA300300.017.165262145
TCGCGTA83350.016.352661145
ATCTCGT353950.015.649036145
GCGCATC690200.015.409599145
ATGCCGT197150.015.261158145
CGCGCAT723350.015.194518145
ATCGCGT94150.015.169878145
TCGCGCA821250.014.795676145
TCTCGCG1015150.014.426379145
GTATGCC266300.014.401929145
CTCGCGC937450.013.936151145
CATCTCG442050.013.727463145
TGCCGTC204650.013.497377145
GCGTATG80900.013.263232145
Produced by FastQC (version 0.11.5)