FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23141488
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG168750.014.435864145
ATAGTGT437450.013.126352145
GCTATAG652050.013.1204405145
TATAGTG527150.012.790751145
CGATAGT96250.012.654816145
GTAGGCT1172800.012.604933145
AGGCTAT932300.012.248197145
CTATAGT566500.011.915083145
TAGGCTA973950.011.865853145
GGCTATA738650.011.690158145
AGGCGAT202300.011.575877145
GCGATAG121250.011.420863145
TGTAGGC1518100.011.3377695145
TAGGCGA195350.011.282555145
AGTGTAG1867550.011.071962145
GGCTATT178000.010.997426145
GAGTGTA1925350.010.94292145
ATCGGAC59400.010.863027145
GGCGATA135300.010.824326145
AGAGTGT2193500.010.015031145
Produced by FastQC (version 0.11.5)