FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14568909
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG118000.020.09087145
TATGCCG89750.019.952417145
CTCGTAT139450.018.196276145
ATCGCGT31400.017.54757145
CGTATGC116000.017.437298145
GAAATCG79700.017.283365145
ATCTCGT200100.015.978076145
AATCTCG228900.015.931445145
TCGCGTA27800.015.90809145
TCTCGTA167050.015.450284145
AATCGCG34100.014.669918145
GTATGCC137950.014.137206145
CGCGTAT22650.014.083722145
ATGCCGT97900.013.625992145
GTCACAT948900.011.55219145
ATTCAGA726250.011.360282145
ACATTCA827400.011.250777145
CATTCAG756550.011.087375145
GCCGTCT95950.011.03166145
AGTCACA1072500.010.910364145
Produced by FastQC (version 0.11.5)