FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72209403
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA672650.09.74514494
ATCGGAA637600.09.71337894
AGATCGG772650.09.56641294
TCGGAAG634400.08.8439194
TAGATCG271250.08.14200494
CGGAAGA645050.08.00585194
ACACGTC233600.07.50307394
CAGATCG314300.06.17451992-93
GAGATCG385200.06.074999394
GCACACG370800.05.943418594
CACACGT333700.05.886040794
AAGATCG248550.05.756665792-93
CGTCTGA189750.05.5223894
ACGTCTG238450.05.20247294
CACGTCT275600.05.183194694
AGAGCAC749850.05.12604194
Produced by FastQC (version 0.11.5)