EGAF00005787248 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005787248
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	72209403
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	22980	0.0	10.369942	94
GCGTCGT	20025	0.0	9.834672	94
GATCGGA	68130	0.0	9.651565	94
ATCGGAA	63545	0.0	9.586101	94
CGTCGTG	19500	0.0	9.376341	94
AGATCGG	78220	0.0	9.367996	94
AGAGCGT	36890	0.0	9.352027	94
GAGCGTC	32125	0.0	8.968829	94
TCGGAAG	64160	0.0	8.688378	94
GTCGTGT	20340	0.0	8.526952	94
AAGAGCG	43965	0.0	7.9646664	94
TAGATCG	25375	0.0	7.927102	92-93
TCGTGTA	16795	0.0	7.8920074	94
CGGAAGA	65220	0.0	7.7328095	94
CGTGTAG	18175	0.0	6.5945344	94
CAGATCG	32635	0.0	6.3082495	94
AAGATCG	26560	0.0	6.1584234	94
GAGATCG	38035	0.0	5.313778	94