FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35406938
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA22350.08.09319946-47
GATCGGA54650.06.79811241
GCGTCGT32350.06.477590610-11
ATCGGAA62750.06.4440562
GCCGTAT30300.06.279852446-47
AGAGCGT70700.06.06431638
GAGCGTC67600.05.9219739
CGTATCA34750.05.746816648-49
AGCGTCG35500.05.504875710-11
CCGTATC38300.05.21414848-49
AAGAGCG90100.05.1746467
TCGGAAG98800.05.04648353
CGTCGTG39450.05.013927512-13
Produced by FastQC (version 0.11.5)