FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28342680
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCG133850.024.70002145
TATGCCG226100.016.578333145
TCGTATG257850.016.477121145
CTCGTAT292100.016.332218145
CGTATGC277150.016.297615145
CGCGTAT74350.016.089918145
TCTCGTA342200.014.0894145
ATCGCGT95900.013.910735145
ATCTCGT398800.013.635057145
TATCTCG403250.013.250857145
TCGTATC657450.013.045865145
ATTCGTA801000.012.735396145
TATCGCG99300.012.704304145
AATTCGT888400.012.608714145
GAATTCG981000.012.527129145
TTCGTAT742050.012.369479145
CGAATTC1076450.012.359277145
ATGCCGT238450.012.314266145
GTATGCC320250.012.11199145
TCGCGTA84350.012.033551145
Produced by FastQC (version 0.11.5)