FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28299438
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGATCG92400.029.42358145
TCGTATG181700.018.07505145
TATGCCG140750.017.925325145
CTCGTAT217150.017.728456145
TCGCGTA45650.016.358093145
CGTATGC179700.016.178288145
TACTCGA713450.016.126854145
ATCTCGT320900.015.724461145
TCTCGTA262050.015.603827145
ACTCGAT641350.015.452888145
CGCGTAT38600.015.213669145
ATCGCGT53600.014.87867145
TTACTCG788700.014.817993145
CTCGATC619450.014.50111145
CGATCGC80150.014.201439145
GATCTCG445200.013.565196145
ATTACTC988000.012.93694145
GTATGCC232800.012.799561145
CGATCTC508800.012.639001145
ATGCCGT163000.012.320501145
Produced by FastQC (version 0.11.5)