FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14741710
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCG81900.026.025364145
CGTATGC175100.018.88044145
CGCGTAT42450.018.103458145
TATGCCG135500.018.031176145
TCGTATG166300.017.786943145
CTCGTAT194700.017.538334145
TCTCGTA232800.017.159399145
TATCTCG282100.016.293694145
TCGTATC465950.015.232697145
ATGCCGT141900.015.22535145
GTATGCC189800.015.011696145
TCGCGTA49200.014.735617145
ATCTCGT270800.014.724735145
ATTCGTA577550.014.209875145
TATCGCG59550.014.122436145
GCCGTCT125350.014.112337145
TTCGTAT523750.014.049971145
AATTCGT645350.014.04262145
ATCGCGT56400.013.882832145
GAATTCG716350.013.602146145
Produced by FastQC (version 0.11.5)