FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57009081
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGATCG35200.012.13270536-37
CGATCGG35700.011.10858738-39
AATTCGT77100.010.920631
ATTCGTG80250.010.4845792
GTCGTAT43250.09.83458574-75
TCGAGTG82200.09.4991621
GCGTAAT47500.08.99152192-93
TATTACG51100.08.8679778-79
TACGTAG51500.08.75082580-81
CGAGTGA94200.08.5826322
CGTATTA53200.08.1685476-77
AGTCGTA54250.08.14483672-73
GGCGTAA56600.08.0016890-91
TAACCGC60300.07.522370358-59
CGCCGTA36850.07.393306346-47
CTAACCG57950.07.2190758-59
ATTACGT62650.07.008229778-79
TTACGTA63050.06.96163980-81
CGTAATC61850.06.943312692-93
CGTGGAT124200.06.89554835
Produced by FastQC (version 0.11.5)