FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29093346
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG257700.015.360923145
ATTAGTG641600.014.475177145
GATTAGT648600.014.240706145
AGATTAG804400.013.366207145
TAAGATT1126300.012.571504145
TGTTAAG1544150.012.07593145
TTAAGAT1399500.011.899457145
GTGTTAA1667650.011.703324145
GAGTGTT2039050.011.594766145
GTTAAGA1365600.011.430352145
AGTGTTA1850650.011.341313145
TTAGTGT354700.011.139723145
TTAGTGG391950.011.079885145
GTTAAGT170550.010.797446145
AGAGTGT2273350.010.744192145
AAGATTA985300.010.110145145
AAGAGTG2462750.010.003273145
ATCGGAC110650.09.828312145
GATTAGG115500.09.7922325145
AAAGAGT2638500.09.422138145
Produced by FastQC (version 0.11.5)