FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36372533
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCTATCG166900.025.715902145
TCGTATG282950.018.422796145
TATGCCG222250.018.398132145
CGTATGC287350.018.090242145
TATCTCG477900.017.70395145
CTCGTAT325800.017.601992145
CGCGTAT67000.017.529787145
ATCGCGT95650.017.130096145
TATCGCG98900.016.200647145
TCGCGTA81550.016.180197145
TCTCGTA397000.016.015684145
AGCTATC935850.015.470637145
ATCTCGT467100.015.350511145
CTATCGC140200.014.841243145
ATGCCGT247400.013.743886145
GTATGCC337400.013.644733145
CTATCTC723450.013.498809145
GAAGCTA1242800.013.102221145
AAGCTAT1108700.012.869078145
GCGTATG88900.012.2328005145
Produced by FastQC (version 0.11.5)