FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38330699
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG276550.014.943129145
ATTAGTG788300.013.455293145
GATTAGT783150.013.312336145
AGATTAG971000.012.8649145
TAAGATT1349400.012.58844145
TGTTAAG1812800.012.106062145
AGTGTTA2173950.011.912482145
GTTAAGA1612900.011.880373145
TTAAGAT1681550.011.464336145
GAGTGTT2400050.011.367221145
GTGTTAA1954550.011.317117145
AGAGTGT2693700.010.709398145
TTAGTGT450450.010.349152145
AAGATTA1209000.010.032519145
AAGAGTG2922500.09.97268145
AAAGAGT3147750.09.694359145
TTAGTGG485800.09.59608145
TAGTGGT395300.09.46375145
ATCGGAC113500.09.389918145
TAGGGAA4036850.09.157622145
Produced by FastQC (version 0.11.5)