FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39977402
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGTAT89000.018.328506145
TATGCCG266950.018.277622145
CTCGTAT383450.018.207573145
CGTATGC345650.018.185158145
TCGTATG327400.018.180216145
TCCATCG299550.018.152084145
TCTCGTA459250.016.323221145
ATCGCGT123450.015.797769145
ATCTCGT540250.015.633841145
TCGCGTA106250.015.557522145
CATCTCG671200.013.577438145
ATGCCGT295750.013.409022145
GTATGCC403850.013.3742895145
CGAGATT1708550.013.349518145
CACGAGA2091650.012.5612755145
TGCCGTC312750.012.401979145
GTCACGA2395700.012.377285145
ACGAGAT1923350.012.359976145
GAGATTC1768200.011.988933145
TCACGAG2260250.011.925798145
Produced by FastQC (version 0.11.5)