FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29171389
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCTATCG149950.027.60771145
TCGTATG197950.019.374964145
CGTATGC210550.018.215504145
TATGCCG166450.017.858328145
CTCGTAT233650.017.531675145
TATCTCG341350.017.45873145
TATCGCG89100.016.84354145
CGCGTAT61600.016.477377145
ATCTCGT337150.016.385984145
ATCGCGT87450.015.834863145
TCTCGTA283250.015.383151145
TCGCGTA73050.014.986406145
AGCTATC689900.014.680843145
CTATCGC121750.013.696185145
GTATGCC262050.013.4459915145
GAAGCTA939600.013.310269145
AAGCTAT825600.013.304046145
CTATCTC513600.013.226816145
ATGCCGT188700.013.139988145
GCGTATG79500.012.037811145
Produced by FastQC (version 0.11.5)