FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005787331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32290420
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCATCG189350.026.151522145
CGTATGC222700.019.207611145
TCGTATG202300.018.815033145
TATGCCG169850.017.074028145
CGCGTAT72250.016.958616145
CTCGTAT236000.016.527678145
TAATGCG969750.015.834623145
TGCGCAT726300.015.392526145
TCGCGTA83800.015.31337145
AATGCGC883400.015.158319145
TCTCGTA289550.015.12359145
ATGCGCA826600.014.814118145
ATCGCGT98150.014.773427145
GCGCATC669950.014.652707145
ATCTCGT343650.014.64147145
GTATGCC275350.014.086732145
CTAATGC1188300.013.4897585145
GCGTATG90600.013.363796145
ACTAATG1333250.013.224935145
ATGCCGT204400.012.946534145
Produced by FastQC (version 0.11.5)