FastQCFastQC Report
Tue 14 May 2024
EGAF00005787367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53953638
Total Bases7.6 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1803190.3342110127958378No Hit
GGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGACCGAAGAC683730.12672546752083705No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT646140.11975837477354169No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA613360.11368278817454348No Hit
CGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACGCA597730.1107858565533616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)