FastQCFastQC Report
Wed 15 May 2024
EGAF00005787368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53953638
Total Bases7.6 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTC703930.13046942265505804No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA616920.11434261393087153No Hit
TGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGG602530.11167550925852304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)