FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005787375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56650747
Sequences flagged as poor quality0
Sequence length15-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1962270.3463802516143344No Hit
GGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGACCGAAGAC707420.12487390501664523No Hit
CGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACGCA705280.12449615183362014No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT620930.10960667473634549No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA619860.10941779814483293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)