FastQCFastQC Report
Thu 2 May 2024
EGAF00005787385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45131277
Total Bases6.4 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1645380.3645764333236128No Hit
GGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGACCGAAGAC560080.12410018887788175No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT546250.12103579519808404No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA518790.1149513230037785No Hit
CGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACGCA467180.1035157946007156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)