FastQCFastQC Report
Fri 3 May 2024
EGAF00005787409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43391469
Total Bases6.1 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1123620.2589495183949637No Hit
TTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTT1108190.25539351986446923No Hit
ATTTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTT663980.15302086223446365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)